This document contains JSON examples for scene metadata layouts.
scene_registration¶
scene_registration.json
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87{ "zarr_format": 3, "node_type": "group", "attributes": { "ome": { "version": "0.6.dev3", "scene": { "coordinateTransformations": [ { "type": "bijection", "input": {"path": "JRC2018F", "name": "physical"}, "output": {"path": "FCWB", "name": "physical"}, "forward": { "type": "sequence", "name": "JRC2018F to FCWB", "transformations": [ { "type": "displacements", "path": "coordinateTransformations/dfield", "interpolation": "linear" }, { "type": "affine", "affine": [ [ 0.549687, -0.0138092, 0.000127526, 2.9986 ], [ 0.0893289, 1.04339, -0.000121014, -6.39702 ], [ 0.00779285, 0.00299018, 0.907875, -3.77146 ] ] } ] }, "inverse": { "type": "sequence", "name": "FCWB to JRC2018F", "transformations": [ { "type": "affine", "affine": [ [ 1.8153162032371448, 0.024026315573955494, -0.00025178851007148946, -5.290659956068192 ], [ -0.1554184181171034, 0.9563570184920926, 0.00014930742384645888, 6.584435749976974 ], [ -0.015070089856986017, -0.003356093187801388, 1.1014748899286995, 4.177888664571422 ] ] }, { "type": "displacements", "path": "coordinateTransformations/invdfield", "interpolation": "linear", "name": "" } ] } } ] } } } }
scene_stitching¶
scene_stitching.json
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72{ "zarr_format": 3, "node_type": "group", "attributes": { "ome": { "version": "0.6.dev3", "scene": { "coordinateTransformations": [ { "type": "translation", "output": "world", "input": {"path": "tile_0", "name": "physical"}, "translation": [ 0, 0 ], "name": "tile_0_mm to world" }, { "type": "translation", "output": "world", "input": {"path": "tile_1", "name": "physical"}, "translation": [ 0, 348 ], "name": "tile_1_mm to world" }, { "type": "translation", "output": "world", "input": {"path": "tile_2", "name": "physical"}, "translation": [ 276, 0 ], "name": "tile_2_mm to world" }, { "type": "translation", "output": "world", "input": {"path": "tile_3", "name": "physical"}, "translation": [ 276, 348 ], "name": "tile_3_mm to world" } ], "coordinateSystems": [ { "name": "world", "axes": [ { "type": "space", "name": "x", "unit": "micrometer", "discrete": false }, { "type": "space", "name": "y", "unit": "micrometer", "discrete": false } ] } ] } } } }